Inputs needed for preparation:
- Manual/initParams: directory storing the outputs of stalkInit (**.mrc/*.rec, *.mod, MOTL.csv, RotAxes.csv)
- Recon/eTomo: directory storing reconstruction output (the folder where you perform eTomo reconstruction) (Optional)
- Expand: the folder that stores the expanded results to be generated.
Output you will get:
Root directory
— Expand:
— tomograms_xxx.star
Below is the GUI used for generating the tomograms.star file.
- Initial Picking File Folder: Manual/initParams
- Tomo Reconstruction Folder: Recon/eTomo
- Output filename: Name your tomograms.star file. User customized
- Expand Folder: Expand result folder that defines the Expand output folder. User customized
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GUI for generating tomograms.star file needed for expansion
You can modify the tomograms.star file based on your own setting. The file format follows the STAR convention.
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